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--- software:uima:setup:groovy [2013/07/01 15:32] – [Set up MongoDB] jworch
+++ software:uima:setup:groovy [2016/05/19 09:19] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ===== Set up ROS =====
+Recommended operating system is Ubuntu 12.04 LTS 64bit.
 Install ROS Groovy (see ''http://www.ros.org/wiki/groovy/Installation/Ubuntu''):
@@ Line 5: / Line 7: @@
   sudo apt-get install ros-groovy-desktop-full
-====== Installing RoboSherlock (using the install script) ======
-Download {{:software:uima:setup:uima_setup.tar.gz|UIMA Install Script}} and untar.
-If ''install_uima.sh'' is not executable add x flag (''chmod +x install_uima.sh'') and afterwards call
-  source ./install_uima.sh
-That will install RoboSherlock into your ROS Workspace (which means you need to have ROS installed and $ROS_WORKSPACE defined) and create an eclipse project in which you can develop your annotators etc.
-====== Installing RoboSherlock (manually) ======
+====== Installing RoboSherlock ======
 Last Update: May 15th, 2013
@@ Line 22: / Line 16: @@
 ==== Standard libraries and PCL ====
-First of all install some standard libraries and PCL
+First of all install some standard libraries and PCL trunk
   sudo apt-get install libicu-dev libxerces-c-dev openjdk-7-jdk libapr1-dev ros-groovy-pcl ros-groovy-openni-camera ros-groovy-openni-launch
+For using pcl trunk with groovy see:
+  http://answers.ros.org/question/62979/how-do-i-use-pcl-17-with-groovy/
+**Note:** you need to enable the //RSD// feature from the features submodule in pcl. To do this go to pcl root directory cd to features and edit the //CMakeLists.txt// file. Uncomment the lines contatining //rsd.h// //rsd.cpp// and //rsd.hpp//. Remake the project (don't do clean!!!!)
 ==== Installation location ====
@@ Line 43: / Line 41: @@
   export PATH=$UIMACPP_HOME/bin:$UIMA_WORKSPACE/apache-uima/bin:$PATH
   export LD_LIBRARY_PATH=$UIMACPP_HOME/lib:$UIMA_WORKSPACE/iai-uima/ias-uima-cpp/lib:$LD_LIBRARY_PATH
-  export CLASSPATH=$UIMA_WORKSPACE/iai-uima/ias-uima-java/build
+  export CLASSPATH=$UIMA_WORKSPACE/iai-uima/ias_uima_rosjava/build/classes/main
   export APR_HOME=/usr
   export ICU_HOME=/usr
   export XERCES_HOME=/usr
-Depending on your OS replace ARCH by amd64 or i386
+  export JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64/
-  export JAVA_HOME=/usr/lib/jvm/java-7-openjdk-ARCH/
   export JAVA_INCLUDE=$JAVA_HOME/include
@@ Line 88: / Line 84: @@
 ==== Set up MongoDB ====
-Get the server. See:
+(Might not be needed)
-[[http://www.mongodb.org/display/DOCS/Ubuntu+and+Debian+packages]]
+Get the server (vs. 2.4.5 64bit). See:
+[[http://www.mongodb.org/downloads]]
-Get the lates client and unpack it to $UIMA_WORKSPACE
+Get the client (vs. 2.2-latest) and unpack it to $UIMA_WORKSPACE
 [[http://dl.mongodb.org/dl/cxx-driver/]]
@@ Line 102: / Line 99: @@
   env.SharedLibrary('mongoclient', clientSource),
-Now ''cd'' to ''MONGODBCLIENT_HOME'', call ''scons'' and finally add
+Add the env variables for mongo to your ''.bashrc''. Remember to source your newly edited bashrc file.
   export MONGODBCLIENT_HOME=$UIMA_WORKSPACE/mongo-cxx-driver-v2.2/
   export MONGODBCLIENT_HOME_INCLUDE=$MONGODBCLIENT_HOME/src
   export LD_LIBRARY_PATH=$MONGODBCLIENT_HOME:$LD_LIBRARY_PATH
-to your ''.bashrc''.
+Now ''cd'' to ''MONGODBCLIENT_HOME'', call ''scons''
 ==== The IAS UIMA Repository ====
 Get the IAS UIMA Repository. Check out code and submodules:
   cd $UIMA_WORKSPACE
-  git clone git@bitbucket.org:code_iai/iai-uima.git
+  git clone git@github.com:code-iai/iai-uima.git
-  git checkout experimental
   cd iai-uima
   git submodule init
@@ Line 121: / Line 117: @@
 Checkout dependencies and add them to your ROS_PACKAGE_PATH:
-  git clone git@bitbucket.org:code_iai/iai_perception_stack.git iai_perception
+  git clone git@github.com:code-iai/iai_perception.git
-  cd iai_perception && git checkout catkin
+  git clone git@github.com:code-iai/entres.git
-  cd -
+  git clone git@github.com:code-iai/iai_common_msgs.git
-  git clone git@bitbucket.org:code_iai/entres.git
+  git clone git@github.com:code-iai/designator_integration.git
-  cd entres && git checkout catkin
-  cd -
+Setup rosjava
-  git clone git@bitbucket.org:code_iai/iai_msgs.git
-  cd iai_msgs && git checkout catkin
+Check out rosjava_core to your catkin ws:
-  cd -
+  git clone git@github.com:rosjava/rosjava_core.git -b groovy-devel
+Details on how to make the project are here:
-Now call
+  http://docs.rosjava.googlecode.com/hg/rosjava_core/html/index.html
-  catkin_make_isolated --install
-== TODO ==
+Now call
-Change the following to rosjava
+  catkin_make
-Finally (if not installed already) install ''ant'' browse to ''$UIMA_WORKSPACE/iai-uima/ias-uima-java/ant'' and call ''ant''
+**Note:** for single core machines run with //-j2//
-  sudo apt-get install ant
-  cd $UIMA_WORKSPACE/iai-uima/ias-uima-java/ant
-  ant
-Now ''ls $UIMA_WORKSPACE/iai-uima/ias-uima-java/build/org/ias/uima/collectionreader/'' should show:
+Now ''ls $UIMA_WORKSPACE/iai-uima/ias_uima_rosjava/build/classes/main/org/uima/collectionreader'' should show:
   Clock.class
-To install apache, php and other things required for the database visualization website, look at ''$UIMA_WORKSPACE/iai-uima/www/README.txt''. To get histograms visualized as graphs, install libphp-jpgraph.
+To install apache, php and other things required for the database visualization website, look at ''$UIMA_WORKSPACE/iai-uima/www/README.txt''. To get histograms visualized as graphs, install //libphp-jpgraph//.
 ===== Run Example =====
   roslaunch openni_launch openni.launch
@@ Line 173: / Line 164: @@
 ===== Known Issues =====
-FeatureClassifierAnnotator does not work if you link it to //plc_io or pcl_visualizer//. This is due to the incompatibility of the native //hdf5// library that comes with ubuntu and the one used by the //icf// package
+FeatureClassifierAnnotator does not work if you link it to //plc_io or pcl_visualizer//. This is due to the incompatibility of the native //hdf5// library that comes with Ubuntu and the one used by the //icf// package